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Accelerating (Biomedical) Knowledge Graph Construction with LLMs

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ML6

ML6

Machine Learning Engineer
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Updated
14 Aug 2026
Published
5 Nov 2024
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1 min
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Accelerating (Biomedical) Knowledge Graph Construction with LLMs
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Accelerating (Biomedical) Knowledge Graph Construction with LLMs
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What does the day in the life of a medical specialist who encounters a patient with an unclear diagnosis look like? Its combing through tens or maybe hundreds of scientific papers to find a gene, cell therapy or something else that may be the key to saving their patient’s life. As you can imagine, this can be a lengthy and time-consuming process. But what if there was a tool this specialist could use to get this information through simple queries, cutting down the amount of time it takes to find the needed information?

Here enter knowledge graphs. In this blogpost, I’m going to walk you through how to build a knowledge graph using Large Language Models (LLMs) to empower biomedical research. This approach can be exploited for other use cases that require organising information from diverse unstructured sources into a structured format — and even for your graphRAG applications.

Read the full blogpost on our Medium channel (code included).

About the author

ML6

ML6 is an AI advisory and engineering company with expertise in data, cloud, and applied machine learning. The team helps organizations bring scalable and reliable AI solutions into production, turning cutting-edge technology into real business impact.

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